R Libraries

For the ROC curves we used the function get_roc_stats() from the usefun R package (Zobolas 2020) and for the PR curves the pr.curve() from the PRROC package (Grau, Grosse, and Keilwagen 2015). Several functions from the emba R package (Zobolas, Kuiper, and Flobak 2020) are also used to load the simulation results.

The AUC sensitivity analysis (for a description see here) was inspired by work from (Pepe 2000).

The heatmaps are generated with the ComplexHeatmap R package (Gu, Eils, and Schlesner 2016).

The report template is from the rtemps R package (Zobolas 2021).

Loading libraries that are used in this report:

library(DT)
library(ggpubr)
library(RColorBrewer)
library(xfun)
library(dplyr)
library(tidyr)
library(tibble)
library(emba)
library(usefun)
library(readr)
library(stringr)
library(latex2exp)
library(corrplot)
library(PRROC)
library(equatiomatic)
library(glmnet)
library(knitr)
library(MAMSE)
library(circlize)
library(ComplexHeatmap)
library(rstatix)
library(survival)
library(survminer)