pydruglogics.model package

Submodules

• pydruglogics.model.BooleanModel module
  • BooleanModel
    • BooleanModel.add_perturbations()
    • BooleanModel.attractor_tool
    • BooleanModel.attractor_type
    • BooleanModel.attractors
    • BooleanModel.binary_boolean_equations
    • BooleanModel.boolean_equations
    • BooleanModel.calculate_attractors()
    • BooleanModel.calculate_global_output()
    • BooleanModel.clone()
    • BooleanModel.from_binary()
    • BooleanModel.get_stable_states()
    • BooleanModel.global_output
    • BooleanModel.has_attractors()
    • BooleanModel.has_global_output()
    • BooleanModel.has_stable_states()
    • BooleanModel.model_name
    • BooleanModel.mutation_type
    • BooleanModel.print()
    • BooleanModel.reset_attractors()
    • BooleanModel.to_binary()
• pydruglogics.model.BooleanModelOptimizer module
  • BooleanModelOptimizer
    • BooleanModelOptimizer.run()
    • BooleanModelOptimizer.save_to_file_models()
• pydruglogics.model.Evolution module
  • Evolution
    • Evolution.best_boolean_models
    • Evolution.calculate_fitness()
    • Evolution.create_initial_population()
    • Evolution.run()
    • Evolution.save_to_file_models()
• pydruglogics.model.InteractionModel module
  • InteractionModel
    • InteractionModel.all_targets
    • InteractionModel.get_activating_regulators()
    • InteractionModel.get_inhibitory_regulators()
    • InteractionModel.get_interaction()
    • InteractionModel.get_target()
    • InteractionModel.interactions
    • InteractionModel.model_name
    • InteractionModel.print()
    • InteractionModel.size()
• pydruglogics.model.ModelPredictions module
  • ModelPredictions
    • ModelPredictions.get_prediction_matrix()
    • ModelPredictions.predicted_synergy_scores
    • ModelPredictions.run_simulations()
    • ModelPredictions.save_to_file_predictions()
• pydruglogics.model.Statistics module
  • compare_two_simulations()
  • sampling_with_ci()

Module contents