Full API

• pydruglogics.execution.Executor
  • train()
  • predict()
• pydruglogics.input.ModelOutputs
  • ModelOutputs.get_model_output()
  • ModelOutputs.size()
  • ModelOutputs.print()
• pydruglogics.input.Perturbations
  • Perturbation.print()
• pydruglogics.input.TrainingData
  • TrainingData.print()
  • TrainingData.size()
• pydruglogics.model.BooleanModel
  • BooleanModel.calculate_attractors()
  • BooleanModel.calculate_global_output()
  • BooleanModel.from_binary()
  • BooleanModel.to_binary()
  • BooleanModel.add_perturbations()
  • BooleanModel.print()
  • BooleanModel.clone()
  • BooleanModel.reset_attractors()
  • BooleanModel.has_attractors()
  • BooleanModel.has_stable_states()
  • BooleanModel.has_global_output()
  • BooleanModel.get_stable_states()
  • BooleanModel.model_name
  • BooleanModel.boolean_equations
  • BooleanModel.binary_boolean_equations
  • BooleanModel.mutation_type
  • BooleanModel.global_output
  • BooleanModel.attractors
  • BooleanModel.attractor_tool
  • BooleanModel.attractor_type
• pydruglogics.model.BooleanModelOptimizer
  • BooleanModelOptimizer.save_to_file_models()
• pydruglogics.model.Evolution
  • Evolution.calculate_fitness()
  • Evolution.create_initial_population()
  • Evolution.run()
  • Evolution.save_to_file_models()
• pydruglogics.model.InteractionModel
  • InteractionModel.size()
  • InteractionModel.print()
  • InteractionModel.get_interaction()
  • InteractionModel.get_target()
  • InteractionModel.get_activating_regulators()
  • InteractionModel.get_inhibitory_regulators()
  • InteractionModel.model_name()
• pydruglogics.model.ModelPredictions
  • ModelPredictions.run_simulations()
  • ModelPredictions.save_to_file_predictions()
  • ModelPredictions.get_prediction_matrix()
• pydruglogics.model.Statistics
  • Statistics.sampling_with_ci()
  • Statistics.compare_two_simulations()
• pydruglogics.utils.Logger
  • set_logger()
• pydruglogics.utils.PlotUtil
  • PlotUtil.plot_roc_and_pr_curve()
  • PlotUtil.plot_pr_curve_with_ci()
• pydruglogics.utils.BNetworkUtil
  • get_file_extension()
  • remove_extension()
  • read_lines_from_file()
  • is_numeric_string()
  • parse_interaction()