pydruglogics.model.ModelPredictions

Simulates Boolean models under perturbations, computes responses, and calculates synergy scores using HSA or Bliss methods.

ModelPredictions.run_simulations(parallel=True, cores=4)

Runs simulations on the Boolean Models with the perturbations, either in parallel or serially.

Parameters

• parallel (bool, optional): Whether to run simulations in parallel. Default: True.

• cores (int, optional): Number of CPU cores to use. Default: 4.

ModelPredictions.save_to_file_predictions(base_folder='./results/predictions')

Save the prediction matrix and synergy results to disk.

Parameters

• base_folder (str, optional): Directory to save results.

ModelPredictions.get_prediction_matrix()

Print or retrieve the prediction matrix (perturbed responses).